[R-SIG-Mac] issues running jags

[Joanna Burgar]

Good day,

I am trying to run R2jags on R version 3.0.2 (2013-09-25) -- "Frisbee Sailing". I have downloaded jags (JAGS-Mavericks-3.4.0) and successfully installed both rjags and R2jags yet for some reason when I try and load the library(rjags) I receive the following error message:

Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so, 10): Symbol not found: __ZN5RangeC1ERKSt6vectorIiSaIiEES4_
Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Expected in: /usr/local/lib/libjags.3.dylib
in /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Error: package or namespace load failed for ?rjags?


Does anyone have any idea why this might be? I have also tried other versions of R and it doesn't seem to be working for them either.

Thanks!
Joanna

_______________________________________________________

install.packages("rjags", dependencies=TRUE)

also installing the dependency ?coda?

trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/coda_0.16-1.tgz'
Content type 'application/x-gzip' length 195822 bytes (191 Kb)
opened URL
==================================================
downloaded 191 Kb

trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/rjags_3-13.tgz'
Content type 'application/x-gzip' length 155926 bytes (152 Kb)
opened URL
==================================================
downloaded 152 Kb


The downloaded binary packages are in
/var/folders/zl/w_8jclgx3zngdxtn_kmfb79m0000gn/T//RtmpfXMoO5/downloaded_packages

install.packages("R2jags", dependencies=TRUE)

also installing the dependencies ?abind?, ?R2WinBUGS?

trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/abind_1.4-0.tgz'
Content type 'application/x-gzip' length 32962 bytes (32 Kb)
opened URL
==================================================
downloaded 32 Kb

trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/R2WinBUGS_2.1-19.tgz'
Content type 'application/x-gzip' length 777630 bytes (759 Kb)
opened URL
==================================================
downloaded 759 Kb

trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/R2jags_0.04-03.tgz'
Content type 'application/x-gzip' length 55203 bytes (53 Kb)
opened URL
==================================================
downloaded 53 Kb


The downloaded binary packages are in
/var/folders/zl/w_8jclgx3zngdxtn_kmfb79m0000gn/T//RtmpfXMoO5/downloaded_packages

library(rjags)

Loading required package: coda
Loading required package: lattice
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so, 10): Symbol not found: __ZN5RangeC1ERKSt6vectorIiSaIiEES4_
Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Expected in: /usr/local/lib/libjags.3.dylib
in /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Error: package or namespace load failed for ?rjags?

[Prof Brian Ripley]

Post by Joanna Burgar
Good day,
call: dyn.load(file, DLLpath = DLLpath, ...)
dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so, 10): Symbol not found: __ZN5RangeC1ERKSt6vectorIiSaIiEES4_
Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Expected in: /usr/local/lib/libjags.3.dylib
in /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Error: package or namespace load failed for ?rjags?
Does anyone have any idea why this might be? I have also tried other versions of R and it doesn't seem to be working for them either.

First, as the R posting guide says, we only support current versions of
R on the mailing lists It asked you to update *before posting*.

Second, you did not tell us your exact OS. <= 10.8 and >= 10.9 default
to different and incompatible C++ compilers: R and JAGS have to be built
with the same one. Now, binary distributions of R 3.0.2 were built with
g++ 4.2.x:
http://sourceforge.net/projects/mcmc-jags/files/JAGS/3.x/Mac%20OS%20X/
shows builds for Mavericks and SnowLeopard, and it is the latter which
is compatible with the binary R 3.0.2.

Post by Joanna Burgar
Thanks!
Joanna
_______________________________________________________

install.packages("rjags", dependencies=TRUE)

also installing the dependency ?coda?
trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/coda_0.16-1.tgz'
Content type 'application/x-gzip' length 195822 bytes (191 Kb)
opened URL
==================================================
downloaded 191 Kb
trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/rjags_3-13.tgz'
Content type 'application/x-gzip' length 155926 bytes (152 Kb)
opened URL
==================================================
downloaded 152 Kb
The downloaded binary packages are in
/var/folders/zl/w_8jclgx3zngdxtn_kmfb79m0000gn/T//RtmpfXMoO5/downloaded_packages

install.packages("R2jags", dependencies=TRUE)

also installing the dependencies ?abind?, ?R2WinBUGS?
trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/abind_1.4-0.tgz'
Content type 'application/x-gzip' length 32962 bytes (32 Kb)
opened URL
==================================================
downloaded 32 Kb
trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/R2WinBUGS_2.1-19.tgz'
Content type 'application/x-gzip' length 777630 bytes (759 Kb)
opened URL
==================================================
downloaded 759 Kb
trying URL 'http://cran.ms.unimelb.edu.au/bin/macosx/contrib/3.0/R2jags_0.04-03.tgz'
Content type 'application/x-gzip' length 55203 bytes (53 Kb)
opened URL
==================================================
downloaded 53 Kb
The downloaded binary packages are in
/var/folders/zl/w_8jclgx3zngdxtn_kmfb79m0000gn/T//RtmpfXMoO5/downloaded_packages

library(rjags)

Loading required package: coda
Loading required package: lattice
call: dyn.load(file, DLLpath = DLLpath, ...)
dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so, 10): Symbol not found: __ZN5RangeC1ERKSt6vectorIiSaIiEES4_
Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Expected in: /usr/local/lib/libjags.3.dylib
in /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rjags/libs/rjags.so
Error: package or namespace load failed for ?rjags?
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